Research ArticlePEDIATRIC NEUROIMAGING
Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors
Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh and Anahita Fathi Kazerooni
American Journal of Neuroradiology May 2024, DOI: https://doi.org/10.3174/ajnr.A8293
Arastoo Vossough
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
cDepartment of Radiology (A.V.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Nastaran Khalili
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Ariana M. Familiar
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Deep Gandhi
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Karthik Viswanathan
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Wenxin Tu
dCollege of Arts and Sciences (W.T.), University of Pennsylvania, Philadelphia, Pennsylvania
Debanjan Haldar
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Sina Bagheri
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
Hannah Anderson
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Shuvanjan Haldar
eSchool of Engineering (S.H.), Rutgers University, New Brunswick, New Jersey
Phillip B. Storm
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
fDepartment of Neurosurgery (P.B.S., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Adam Resnick
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
Jeffrey B. Ware
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
Ali Nabavizadeh
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
Anahita Fathi Kazerooni
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
fDepartment of Neurosurgery (P.B.S., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
gCenter for AI & Data Science for Integrated Diagnostics (A.F.K.), University of Pennsylvania, Philadelphia, Pennsylvania
hCenter for Biomedical Image Computing and Analytics (A.F.K.), University of Pennsylvania, Philadelphia, Pennsylvania

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Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh, Anahita Fathi Kazerooni
Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors
American Journal of Neuroradiology May 2024, DOI: 10.3174/ajnr.A8293
Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors
Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh, Anahita Fathi Kazerooni
American Journal of Neuroradiology May 2024, DOI: 10.3174/ajnr.A8293
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