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Research ArticleArtificial Intelligence

Predicting Antiseizure Medication Treatment in Children with Rare Tuberous Sclerosis Complex–Related Epilepsy Using Deep Learning

Haifeng Wang, Zhanqi Hu, Dian Jiang, Rongbo Lin, Cailei Zhao, Xia Zhao, Yihang Zhou, Yanjie Zhu, Hongwu Zeng, Dong Liang, Jianxiang Liao and Zhicheng Li
American Journal of Neuroradiology December 2023, 44 (12) 1373-1383; DOI: https://doi.org/10.3174/ajnr.A8053
Haifeng Wang
aFrom the Research Center for Medical Artificial Intelligence (H.W., D.J., Y. Zhou, D.L., Z.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
bShenzhen College of Advanced Technology (H.W., D.J., Y.Zhu, D.L., Z.L.), University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
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Zhanqi Hu
dDepartment of Neurology (Z.H., R.L., X.Z., J.L.), Shenzhen Children's Hospital, Shenzhen, Guangdong, China
eDepartment of Pediatric Neurology (Z.H.), Boston Children's Hospital, Boston, Massachusetts
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Dian Jiang
aFrom the Research Center for Medical Artificial Intelligence (H.W., D.J., Y. Zhou, D.L., Z.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
bShenzhen College of Advanced Technology (H.W., D.J., Y.Zhu, D.L., Z.L.), University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
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Rongbo Lin
dDepartment of Neurology (Z.H., R.L., X.Z., J.L.), Shenzhen Children's Hospital, Shenzhen, Guangdong, China
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Cailei Zhao
fDepartment of Radiology (C.Z., H.Z.), Shenzhen Children's Hospital, Shenzhen, Guangdong, China
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Xia Zhao
dDepartment of Neurology (Z.H., R.L., X.Z., J.L.), Shenzhen Children's Hospital, Shenzhen, Guangdong, China
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Yihang Zhou
aFrom the Research Center for Medical Artificial Intelligence (H.W., D.J., Y. Zhou, D.L., Z.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
gResearch Department (Y. Zhou), Hong Kong Sanatorium and Hospital, Hong Kong, China
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Yanjie Zhu
bShenzhen College of Advanced Technology (H.W., D.J., Y.Zhu, D.L., Z.L.), University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
cPaul C. Lauterbur Research Center for Biomedical Imaging (Y.Zhu, D.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
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Hongwu Zeng
fDepartment of Radiology (C.Z., H.Z.), Shenzhen Children's Hospital, Shenzhen, Guangdong, China
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Dong Liang
aFrom the Research Center for Medical Artificial Intelligence (H.W., D.J., Y. Zhou, D.L., Z.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
bShenzhen College of Advanced Technology (H.W., D.J., Y.Zhu, D.L., Z.L.), University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
cPaul C. Lauterbur Research Center for Biomedical Imaging (Y.Zhu, D.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
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Jianxiang Liao
dDepartment of Neurology (Z.H., R.L., X.Z., J.L.), Shenzhen Children's Hospital, Shenzhen, Guangdong, China
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Zhicheng Li
aFrom the Research Center for Medical Artificial Intelligence (H.W., D.J., Y. Zhou, D.L., Z.L.), Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
bShenzhen College of Advanced Technology (H.W., D.J., Y.Zhu, D.L., Z.L.), University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
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  • FIG 1.
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    FIG 1.

    The net schematic of the proposed WAE-net method. A, Schematic of our proposed WAE-net pipeline. The ResNet3D took T2-weighted, FLAIR, and FLAIR3 images as input and output prediction scores, respectively. A FCNN model accepted age, sex, and TSC symptom variables as input and output a prediction score. A WAE-net used prediction scores from the T2-weighted, FLAIR, FLAIR3, and clinical models as input and output a final classification by a simple and effective direct weighted-averaging method. B, Network structure of ResNet3D. FC indicates fully connected layer; conv3d, 3D convolution.

  • FIG 2.
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    FIG 2.

    Study inclusion criteria. Flow chart details the identification of the study cohort. ILAE indicates International League Against Epilepsy.

  • FIG 3.
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    FIG 3.

    The applied operations of preprocessing pipeline, training, and evaluation. Schematic of the data preprocessing pipeline (A) and training and evaluation scheme (B). Five models were trained for each technique and used to predict drug-treatment outcome individually. The 5 predictions were averaged to give the final prediction of the model performances.

  • FIG 4.
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    FIG 4.

    Statistical analysis of the clinical data set. A and B, Boxplots for continuous variables. A, Age at onset. B, Age at imaging. The horizontal axis represents groups, and the vertical axis represents features. The middle line of the boxplot is the median of the feature data. The upper and lower bounds of the boxplot are the upper and lower quartiles of the feature data, respectively. P values are the results of the Spearman correlation test. C and D, Stacked barplots for categoric variables. C, Infantile spasms. D, ASM numbers (≥3). The horizontal axis represents features (1.0 represents ASM numbers [≥3] or infantile spasms; 0.0 represents ASM numbers [<3] or no infantile spasms), and the vertical axis represents the number of patients in the 2 groups. P values of continuous variables are the results of F-tests, and P values of categoric variables are the results of χ2 tests.

  • FIG 5.
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    FIG 5.

    Representative images from a child with TSC in the controlled group, a child with TSC in the uncontrolled group, and a healthy child shown on T2WI, FLAIR, and the proposed synthetic FLAIR3 (TSC lesion, white arrow). Controlled group (A) uncontrolled group (B), and healthy child group (C).

  • FIG 6.
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    FIG 6.

    The performances of the final T2-weighted, FLAIR, FLAIR3, clinical pediatric data, and the proposed WAE-net models on the test set.

  • FIG 7.
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    FIG 7.

    Analysis of the single technique and the proposed WAE-net methods. A, ROC curves in FLAIR, T2-weighted, FLAIR3, and the clinical model of the testing cohort. B, ROC curves in the proposed WAE-net of the testing cohort. C, DCA for FLAIR decision. T2-weighted, FLAIR3, and the clinical model of the testing cohort. D, DCA for the proposed WAE-net of the testing cohort. The black line represents the assumption that all patients have interventions. The black dotted line represents the assumption that no patients have interventions. The colored lines represent the different models. The horizontal axis represents the threshold probability, and the vertical axis represents the net benefit.

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    Table 1:

    Network structure of FCNN using 1-dimensional clinical variables

    Layer NameOutput Dims
    Input layer(1,4)
        FC11024
        FC2512
        FC3128
        FC464
        FC532
        FC616
    Output layer1
    • Note:—FC indicates fully connected layer; Dims, dimensions.

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    Table 2:

    The clinical characteristics of pediatric patients with rare TSCa

    CharacteristicsControlled (n = 97)Uncontrolled (n = 203)P Value
    Male (No.) (%)56 (57.7%)107 (52.7%).416
    Age at onset (mean) (months)30.44 (SD, 33.17)17.35 (SD, 26.22)<.001b
    Age at imaging (mean) (months)57.01 (SD, 45.18)36.27 (SD, 40.37)<.001b
    Infantile spasms (No.) (%)21 (21.6%)93 (45.8%)<.001b
    Epilepsy (No.) (%)97 (100.0%)203 (100.0%)
    ASM numbers (≥3), n (%)42 (43.3%)171 (84.2%)<.001b
    Focal epilepsy (No.) (%)75 (77.3%)16 5 (81.3%).424
    • Note:—Controlled indicates controlled seizures; Uncontrolled, uncontrolled seizures.

    • ↵a P values of continuous variables are the results of F-tests, and P values of categoric variables are the results of χ2 tests.

    • ↵b The statistical significance between the groups.

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    Table 3:

    Performance results compared with other networks on FLAIR

    TechniqueModelAUCACCSENSPE
    FLAIRResNet3D0.7830.6950.6500.790
    FLAIRLeNet3D0.6600.6440.6000.737
    FLAIRVGG3D0.7650.7460.8250.579
    • Note:—ResNet3D is derived from He et al;26 LeNet3D is derived from Simonyan;46 VGG3D is derived from Szegedy et al.47

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    Table 4:

    The results of testing set

    TechniqueModelAUCACCSENSPE
    FLAIRResNet3D0.7830.6950.6500.790
    T2WIResNet3D0.6490.5930.4500.895
    FLAIR3ResNet3D0.7300.6950.7000.684
    Clinical dataFCNN0.7740.8310.9500.579
    FLAIR+ clinical dataWAE-net0.8260.8470.9740.580
    FLAIR3+ clinical dataWAE-net0.8870.8310.8500.789
    T2WI+ clinical dataWAE-net0.8090.8470.9750.579
    Ensemble allWAE-net0.9080.8470.8500.842
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American Journal of Neuroradiology: 44 (12)
American Journal of Neuroradiology
Vol. 44, Issue 12
1 Dec 2023
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Cite this article
Haifeng Wang, Zhanqi Hu, Dian Jiang, Rongbo Lin, Cailei Zhao, Xia Zhao, Yihang Zhou, Yanjie Zhu, Hongwu Zeng, Dong Liang, Jianxiang Liao, Zhicheng Li
Predicting Antiseizure Medication Treatment in Children with Rare Tuberous Sclerosis Complex–Related Epilepsy Using Deep Learning
American Journal of Neuroradiology Dec 2023, 44 (12) 1373-1383; DOI: 10.3174/ajnr.A8053

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DL for Tuberous Sclerosis Epilepsy Treatment
Haifeng Wang, Zhanqi Hu, Dian Jiang, Rongbo Lin, Cailei Zhao, Xia Zhao, Yihang Zhou, Yanjie Zhu, Hongwu Zeng, Dong Liang, Jianxiang Liao, Zhicheng Li
American Journal of Neuroradiology Dec 2023, 44 (12) 1373-1383; DOI: 10.3174/ajnr.A8053
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