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AJNR Awards, New Junior Editors, and more. Read the latest AJNR updates

Research ArticlePediatrics

Automatic Localization of the Pons and Vermis on Fetal Brain MR Imaging Using a U-Net Deep Learning Model

Farzan Vahedifard, Xuchu Liu, Jubril O. Adepoju, Shiqiao Zhao, H. Asher Ai, Kranthi K. Marathu, Mark Supanich, Sharon E. Byrd and Jie Deng
American Journal of Neuroradiology October 2023, 44 (10) 1191-1200; DOI: https://doi.org/10.3174/ajnr.A7978
Farzan Vahedifard
aFrom the Department of Diagnostic Radiology and Nuclear Medicine (F.V., X.L., J.O.A., K.K.M., S.E.B.), Rush Medical College, Chicago, Illinois
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  • ORCID record for Farzan Vahedifard
Xuchu Liu
aFrom the Department of Diagnostic Radiology and Nuclear Medicine (F.V., X.L., J.O.A., K.K.M., S.E.B.), Rush Medical College, Chicago, Illinois
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Jubril O. Adepoju
aFrom the Department of Diagnostic Radiology and Nuclear Medicine (F.V., X.L., J.O.A., K.K.M., S.E.B.), Rush Medical College, Chicago, Illinois
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Shiqiao Zhao
bDepartment of Biostatistics (S.Z.), Yale School of Public Health, New Haven, Connecticut
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H. Asher Ai
cDivision for Diagnostic Medical Physics (H.A.A., M.S.), Department of Radiology and Nuclear Medicine, Rush University Medical Center, Chicago, Illinois
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Kranthi K. Marathu
aFrom the Department of Diagnostic Radiology and Nuclear Medicine (F.V., X.L., J.O.A., K.K.M., S.E.B.), Rush Medical College, Chicago, Illinois
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Mark Supanich
cDivision for Diagnostic Medical Physics (H.A.A., M.S.), Department of Radiology and Nuclear Medicine, Rush University Medical Center, Chicago, Illinois
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Sharon E. Byrd
aFrom the Department of Diagnostic Radiology and Nuclear Medicine (F.V., X.L., J.O.A., K.K.M., S.E.B.), Rush Medical College, Chicago, Illinois
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Jie Deng
dDepartment of Radiation Oncology (J.D.), Division of Medical Physics & Engineering, University of Texas Southwestern Medical Center, Dallas, Texas
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  • FIG 1.
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    FIG 1.

    The architecture of the U-Net model for landmark detection. The U-Net converts a sagittal fetal brain image into gray-scale masks in which the vertex represents the locations of different landmark points. Up-conv indicates up-sampling operation; conv, convolutional layer; ReLU, Rectified Linear Activation.

  • FIG 2.
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    FIG 2.

    The cut surface of a 3D rotationally symmetric Gaussian distribution function with the radius (R), and the top represents the landmark point position.

  • FIG 3.
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    FIG 3.

    Fronto-occipital radius of the fetal brain determines the radius of Gaussian distribution function in a patient at GA week 20 (A–D) and another at GA week 33 (E–H). The left 2 columns are MR images with a fronto-occipital radius (A and E) and annotated landmark points on the vermis (B and F). The third column (C and G) shows the image mask with the Gaussian distribution used in model training. The fourth column shows the image area surrounding the landmark (D and H) determined by the Gaussian distribution function, with an added white circle indicating the radius range.

  • FIG 4.
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    FIG 4.

    Two 4-fold cross-validation methods for DL-model training and testing. Method 1 divided the data sets by sorting the ranges of GA weeks (A). Method 2 divided the data sets randomly with mixed GA weeks (B).

  • FIG 5.
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    FIG 5.

    The scatterplot (A) and contour line plot (B) of the prediction error distribution with associated confidence scores in the sorted GA week validation method. The x-axis represents the distance (millimeters) between the predicted landmark and the ground truth, and the y-axis represents the confidence score of the prediction.

  • FIG 6.
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    FIG 6.

    The scatterplot (A) and contour line plot (B) of the distribution of prediction error with associated confidence scores in the randomly mixed GA week validation method. The x-axis represents the distance (millimeters) between the predicted landmark and the ground truth, and the y-axis represents the confidence score of the prediction.

  • FIG 7.
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    FIG 7.

    Representative image examples of model-predicted landmark locations with biometric measurements. (The white line is manual annotations by radiologists, and the purple line is DL-model predicted measurements). Three patients (A, 22 weeks; B, 22 weeks; C, 27 weeks) with accurate model-predicted landmarks compared with radiologists.

  • FIG 8.
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    FIG 8.

    An interactive tool integrating DL-model-based prediction of landmarks. It helps the radiologist quickly locate, confirm, or adjust the landmarks on the automatically selected image section. After the landmark locations are confirmed, the distance between 2 related landmarks on a particular brain structure is calculated. The white line is the “Pons” AP diameter, and red crossed lines are “Vermis” AP diameter and height.

Tables

  • Figures
  • Compared manual landmark localization conducted by a radiologist and an expert pediatric neuroradiologist

    Pons1Pons2Vermis1Vermis2HVermis1HVermis2
    Mean (mm)1.410.790.421.871.281.51
    SD (mm)1.120.760.591.811.381.68
    • Note:—Pons1 indicates Anterior landmark of Pons; Pons2, Posterior landmark of Pons; Vermis1, Anterior landmark of Vermis; Vermis2, Posterior landmark of Vermis; Hvermis1, Superior landmark of Vermis (height of vermis); Hvermis2, Inferior landmark of Vermis (height of vermis).

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American Journal of Neuroradiology: 44 (10)
American Journal of Neuroradiology
Vol. 44, Issue 10
1 Oct 2023
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Cite this article
Farzan Vahedifard, Xuchu Liu, Jubril O. Adepoju, Shiqiao Zhao, H. Asher Ai, Kranthi K. Marathu, Mark Supanich, Sharon E. Byrd, Jie Deng
Automatic Localization of the Pons and Vermis on Fetal Brain MR Imaging Using a U-Net Deep Learning Model
American Journal of Neuroradiology Oct 2023, 44 (10) 1191-1200; DOI: 10.3174/ajnr.A7978

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Pons&Vermis Localization on Fetal MRI Using U-Net
Farzan Vahedifard, Xuchu Liu, Jubril O. Adepoju, Shiqiao Zhao, H. Asher Ai, Kranthi K. Marathu, Mark Supanich, Sharon E. Byrd, Jie Deng
American Journal of Neuroradiology Oct 2023, 44 (10) 1191-1200; DOI: 10.3174/ajnr.A7978
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