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Improved Turnaround Times | Median time to first decision: 12 days

Research ArticleAdult Brain

Deep Learning–Based Detection of Intracranial Aneurysms in 3D TOF-MRA

T. Sichtermann, A. Faron, R. Sijben, N. Teichert, J. Freiherr and M. Wiesmann
American Journal of Neuroradiology January 2019, 40 (1) 25-32; DOI: https://doi.org/10.3174/ajnr.A5911
T. Sichtermann
aFrom the Department of Diagnostic and Interventional Neuroradiology (T.S., A.F., R.S., N.T., J.F., M.W.), University Hospital RWTH Aachen, Aachen, Germany
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A. Faron
aFrom the Department of Diagnostic and Interventional Neuroradiology (T.S., A.F., R.S., N.T., J.F., M.W.), University Hospital RWTH Aachen, Aachen, Germany
bDepartment of Radiology (A.F.), University Hospital Bonn, Bonn, Germany
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R. Sijben
aFrom the Department of Diagnostic and Interventional Neuroradiology (T.S., A.F., R.S., N.T., J.F., M.W.), University Hospital RWTH Aachen, Aachen, Germany
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N. Teichert
aFrom the Department of Diagnostic and Interventional Neuroradiology (T.S., A.F., R.S., N.T., J.F., M.W.), University Hospital RWTH Aachen, Aachen, Germany
bDepartment of Radiology (A.F.), University Hospital Bonn, Bonn, Germany
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J. Freiherr
aFrom the Department of Diagnostic and Interventional Neuroradiology (T.S., A.F., R.S., N.T., J.F., M.W.), University Hospital RWTH Aachen, Aachen, Germany
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M. Wiesmann
aFrom the Department of Diagnostic and Interventional Neuroradiology (T.S., A.F., R.S., N.T., J.F., M.W.), University Hospital RWTH Aachen, Aachen, Germany
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    Fig 1.

    Flowchart of the pipeline. A, Preprocessing is performed with 4 different models. The dataset is split into test, training, and validation sets. B, Inference is performed with the convolutional neural network DeepMedic with a 2-pathway architecture. The number of feature maps and their size is depicted as number × size. The + depicts the addition of the 2 preceding layers, which adds an additional nonlinearity and reduces the number of weights.18 The diagram is based on the depiction in the DeepMedic documentation. (Modified from Kamnitsas K, Ledig C, Newcombe VFJ, et al. Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation. Medical Image Analysis 2017;36:61–78 under CC-BY4 license).32 C, Thresholding is applied to the resulting segmentation and evaluated with different metrics. LN indicates layers in the normal resolution pathway, LL indicates layers in the low resolution pathway.

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    Fig 2.

    Impact of detection thresholds on sensitivity, the number of false-positives, and the positive predictive value (PPV). Versions A, B, C, D without detection thresholds (A0, B0, C0, D0) and with thresholds of 5 mm3 (A5, B5, C5, D5), 6 mm3 (A6, B6, C6, D6), and 7 mm3 (A7, B7, C7, D7). Depicted as bars are the FPs/case; depicted as diamonds are the sensitivities. PPV is shown below the diagrams for each model. The asterisk indicates P < .05; double asterisks, P = .001; triple asterisks, P < .001.

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    Fig 3.

    Results of the DeepMedic inference and thresholding method. Illustrated are 2 different subjects (top/bottom). In these volumes, aneurysms of different sizes with heterogenic and homogeneous intensity distributions are detected. After we remove small components below a certain volume, false-positives are removed sufficiently.

Tables

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    Table 1:

    Sensitivity depending on aneurysm size and preprocessing model

    ≤3 mm (Small) (n = 13)>3 and ≤7 mm (Medium) (n = 57)>7 mm (Large) (n = 45)Fisher Exact Test Statistic
    A0.38.93129.00, P < .001
    B0.38.91.9825.93, P < .001
    C0.23.96.9838.43, P < .001
    D0.08.95.9849.89, P < .001
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    Table 2:

    Correlation between ground truth volume and model volume prediction depending on aneurysm size and preprocessing model

    ≤3 mm (Small) (n = 13)>3 and ≤7 mm (Medium) (n = 57)>7 mm (Large) (n = 45)Overall
    A0rs = −.28 (P = .36)rs = .46 (P < .001)rs = .91 (P < .001)rs = .90 (P < .001)
    B0rs = −.03 (P = .91)rs = .45 (P < .001)rs = .87 (P < .001)rs = .87 (P < .001)
    C0rs = −.09 (P = .78)rs = .47 (P < .001)rs = .89 (P < .001)rs = .88 (P < .001)
    D0rs = −.31 (P = .31)rs = .43 (P = .001)rs = .89 (P < .001)rs = .88 (P < .001)
    • Note:—rs indicates the Spearman correlation coefficient.

    • View popup
    Table 3:

    Sensitivity of the different models depending on aneurysm location and preprocessing model

    ICA (n = 48)MCA (n = 26)A (n = 19)P (n = 22)Fisher Exact Test Statistic
    A0.90.92.84.91.98, P = .86
    B0.88.88.79.952.52, P = .48
    C0.85.92.84.952.09, P = .59
    D0.83.92.79.912.27, P = .53
    • Note:—A indicates the anterior cerebral arteries (including the anterior communicating artery); P, posterior circulation (including vertebral, basilar, posterior, cerebral and posterior communicating arteries).

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    Table 4:

    Mean DSC and mean Hausdorff distance depending on the preprocessing model

    DSC (SD)Hausdorff Distance (SD)
    A0.47 (.28)90.16 (22.25)
    B0.53 (.29)70.20 (16.58)
    C0.53 (.30)65.40 (18.89)
    D0.53 (.31)69.67 (19.08)
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American Journal of Neuroradiology: 40 (1)
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T. Sichtermann, A. Faron, R. Sijben, N. Teichert, J. Freiherr, M. Wiesmann
Deep Learning–Based Detection of Intracranial Aneurysms in 3D TOF-MRA
American Journal of Neuroradiology Jan 2019, 40 (1) 25-32; DOI: 10.3174/ajnr.A5911

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Deep Learning–Based Detection of Intracranial Aneurysms in 3D TOF-MRA
T. Sichtermann, A. Faron, R. Sijben, N. Teichert, J. Freiherr, M. Wiesmann
American Journal of Neuroradiology Jan 2019, 40 (1) 25-32; DOI: 10.3174/ajnr.A5911
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