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Research ArticlePediatric Neuroimaging

Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors

Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh and Anahita Fathi Kazerooni
American Journal of Neuroradiology August 2024, 45 (8) 1081-1089; DOI: https://doi.org/10.3174/ajnr.A8293
Arastoo Vossough
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
cDepartment of Radiology (A.V.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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  • ORCID record for Arastoo Vossough
Nastaran Khalili
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Ariana M. Familiar
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Deep Gandhi
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Karthik Viswanathan
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Wenxin Tu
dCollege of Arts and Sciences (W.T.), University of Pennsylvania, Philadelphia, Pennsylvania
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Debanjan Haldar
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Sina Bagheri
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
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Hannah Anderson
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Shuvanjan Haldar
eSchool of Engineering (S.H.), Rutgers University, New Brunswick, New Jersey
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Phillip B. Storm
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
fDepartment of Neurosurgery (P.B.S., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Adam Resnick
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
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Jeffrey B. Ware
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
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Ali Nabavizadeh
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
bDepartment of Radiology (A.V., S.B., J.B.W., A.N.), University of Pennsylvania, Philadelphia, Pennsylvania
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Anahita Fathi Kazerooni
aFrom the Center for Data Driven Discovery in Biomedicine (A.V., N.K., A.M.F., D.G., K.V., D.H., S.B., H.A., P.B.S., A.R., A.N., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
fDepartment of Neurosurgery (P.B.S., A.F.K.), Children’s Hospital of Philadelphia, Philadelphia, Pennsylvania
gCenter for AI & Data Science for Integrated Diagnostics (A.F.K.), University of Pennsylvania, Philadelphia, Pennsylvania
hCenter for Biomedical Image Computing and Analytics (A.F.K.), University of Pennsylvania, Philadelphia, Pennsylvania
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American Journal of Neuroradiology: 45 (8)
American Journal of Neuroradiology
Vol. 45, Issue 8
1 Aug 2024
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Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors
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Cite this article
Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh, Anahita Fathi Kazerooni
Training and Comparison of nnU-Net and DeepMedic Methods for Autosegmentation of Pediatric Brain Tumors
American Journal of Neuroradiology Aug 2024, 45 (8) 1081-1089; DOI: 10.3174/ajnr.A8293

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nnU-Net vs DeepMedic for PEDS BT Segmentation
Arastoo Vossough, Nastaran Khalili, Ariana M. Familiar, Deep Gandhi, Karthik Viswanathan, Wenxin Tu, Debanjan Haldar, Sina Bagheri, Hannah Anderson, Shuvanjan Haldar, Phillip B. Storm, Adam Resnick, Jeffrey B. Ware, Ali Nabavizadeh, Anahita Fathi Kazerooni
American Journal of Neuroradiology Aug 2024, 45 (8) 1081-1089; DOI: 10.3174/ajnr.A8293
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