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Research ArticleBrain
Open Access

Pitfalls in the Use of Voxel-Based Morphometry as a Biomarker: Examples from Huntington Disease

S.M.D. Henley, G.R. Ridgway, R.I. Scahill, S. Klöppel, S.J. Tabrizi, N.C. Fox, J. Kassubek and for the EHDN Imaging Working Group
American Journal of Neuroradiology April 2010, 31 (4) 711-719; DOI: https://doi.org/10.3174/ajnr.A1939
S.M.D. Henley
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G.R. Ridgway
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R.I. Scahill
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S. Klöppel
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S.J. Tabrizi
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N.C. Fox
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J. Kassubek
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  • Fig 1.
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    Fig 1.

    Effect of type and level of statistical correction. All SPMs show the same contrast: regions in which the early HD group has reduced GM volume relative to controls (this is true throughout the article unless otherwise stated). SPMs are smoothed at 4-mm FWHM. The 3 SPMs in the top panel show various levels of FWE correction, and the 3 SPMs below show various levels of uncorrected SPMs. The color bar shows the t value and is applicable to all figures in this article.

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    Fig 2.

    Effect of using modulated or unmodulated data. Both SPMs show the same contrast of early HD versus controls, corrected at FWE P < .05, smoothed at 4-mm FWHM.

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    Fig 3.

    Effect of smoothing kernel size. All SPMs show early HD versus controls, corrected at FWE P < .05. The SPMs are smoothed at 4-, 6-, and 8-mm FWHM.

  • Fig 4.
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    Fig 4.

    Graphs demonstrate how TIV and total GM volume vary with age and motor score (an index of HD severity). The top 2 graphs show that the relationship between TIV and both age and motor score is small and not statistically significant. The bottom 2 graphs show that total GM volume decreases with age (r = −0.26, P = .017) and motor score (r = −0.31, P = .0493).

  • Fig 5.
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    Fig 5.

    Effects of adjusting for TIV with and without including total GM volume. All SPMs show early HD versus controls, corrected at FWE P < .05, smoothed at 4-mm FWHM. The top row shows the effect of including or excluding TIV as a covariate. The bottom row shows the effect of adjusting for total GM volume with and without TIV.

  • Fig 6.
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    Fig 6.

    Subgroup analyses. The left SPM shows regions in which a group of high motor scorers have reduced GM volume relative to matched controls. The center SPM shows regions in which a group of low motor scorers have reduced GM volume relative to controls. The right SPM shows the results when the high and low motor scorer groups are compared directly.

Tables

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    Table 1:

    Demographic dataa

    ControlPremanifestEarly HD
    (n = 20)(n = 21)(n = 40)
    Gender (M:F)7:1310:1120:20
    Age (yr)44.9 (10.5)37.2 (7.9)48.5 (9.6)
    CAG repeat lengthNA42.2 (1.8), range, 40–4543.7 (2.4), range, 40–50
    Predicted years to onsetbNA18.2 (7.1), range, 9–35NA
    Disease duration (yr since onset)NANA4.1 (2.6)
    UHDRS motorc1.1 (0.9)3.6 (4.0)28.9 (12.6)
    UHDRS independenced100 (0)100 (0)90.4 (9.6)
    UHDRS TFCe13 (0)13 (0)10.9 (1.8)
    • a Data are mean (SD) with the exception of gender and handedness.

    • b Onset was defined as a 60% chance of showing motor signs (a greater chance of showing signs than not, as described in Feigin et al30) and was predicted using the equation of Langbehn et al.31

    • c UHDRS motor is out of 124; higher score indicates more severely impaired.

    • d Independence is a percentage; higher score indicates better function.

    • e TFC is out of 13; higher score indicates better function.

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    Table 2:

    Summary of processing methods used by other groupsa

    StudySPM VersionNormalizationSegmentationMod.Smoothing FWHM (mm)Correction
    Thieben et al3299Study-specific GM template, patients and controlsUnspecifiedYes10SPM uncorrected, p < .005; reported results mostly small-volume-corrected
    Ho et al3399Study-specific GM template, all controls onlyStudy-specific GM template, all controls onlyYes12SPM and reported results uncorrected, P < .0001; cluster 10 voxels
    Kassubek et al1899Study-specific template, whole-brain or GM unspecified; subjects unspecifiedUnspecifiedNo6SPM and reported results FWE P < .001; clusters 54 voxels
    Kassubek et al3499Study-specific template, 50:50 patients:controls; whole-brain or GM unspecifiedStudy-specific template, 50:50 patients:controlsYes6SPM and reported results FWE P < .001
    Peinemann et al2699Study-specific template, whole-brain or GM only unspecified; subjects unspecifiedUnspecifiedNo6SPM and reported results FWE P < .05
    Douaud et al352Study-specific symmetric GM template, 50:50 patients:controls, from original and mid-plane-reflected imagesStudy-specific GM template, 50:50 patients:controls, from original and symmetric imagesYes8SPM and reported results FDR P < .01
    Barrios et al27Not specifiedStandard whole-brain templateNot specifiedNo4SPM and reported results uncorrected; P < .01, clusters >10 mm3
    Gavazzi et al362Study-specific GM template, subjects unspecifiedStudy-specific GM template, subjects unspecifiedYes10SPM and reported results corrected; P < .01 (type unspecified)
    Jech et al372Study-specific GM template, all patients; no controls in studyStudy-specific GM template, all patients; no controls in studyYes10SPM uncorrected P < .001; reported results uncorrected in striatum or rolandic area, P < .001, elsewhere, FDR P < .05
    Kipps et al382Study-specific template, patients and controls, exact makeup unspecifiedNot specifiedYes8Uncorrected, P < .05
    Mühlau et al392Study-specific prior probability maps, subjects and whether used for normalization as well as segmentation unspecifiedYes8SPM and reported results FWE P <.05, extent P <.05, clusters P < .001
    Mühlau et al252Study-specific prior probability maps, subjects and whether used for normalization as well as segmentation unspecifiedYes8SPM and reported results FWE P < .05, clusters P < .05
    Ruocco et al402Study-specific GM template, healthy volunteers otherwise unused in studyStudy-specific GM template, healthy volunteers otherwise unused in studyYes10SPM and reported results FDR P < .05
    Wolf et al412Study-specific whole-brain template, 50:50 patients:controlsStudy-specific GM templates, 50:50 patients:controlsYes8SPM not shown; reported results FWE P < .001
    Henley et al72Standard GM templateStandard GM templateYes8SPM and reported results small-volume corrected FDR P < .05
    Wolf et al422Study-specific whole-brain template, 50:50 patients:controlsStudy-specific GM templates, 50:50 patients:controlsYes8SPM and reported results FWE P < .001
    • a Studies are listed by year and then author.

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American Journal of Neuroradiology: 31 (4)
American Journal of Neuroradiology
Vol. 31, Issue 4
1 Apr 2010
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Pitfalls in the Use of Voxel-Based Morphometry as a Biomarker: Examples from Huntington Disease
S.M.D. Henley, G.R. Ridgway, R.I. Scahill, S. Klöppel, S.J. Tabrizi, N.C. Fox, J. Kassubek, for the EHDN Imaging Working Group
American Journal of Neuroradiology Apr 2010, 31 (4) 711-719; DOI: 10.3174/ajnr.A1939
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S.M.D. Henley, G.R. Ridgway, R.I. Scahill, S. Klöppel, S.J. Tabrizi, N.C. Fox, J. Kassubek, for the EHDN Imaging Working Group
Pitfalls in the Use of Voxel-Based Morphometry as a Biomarker: Examples from Huntington Disease
American Journal of Neuroradiology Apr 2010, 31 (4) 711-719; DOI: 10.3174/ajnr.A1939

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