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AJNR Awards, New Junior Editors, and more. Read the latest AJNR updates

Research ArticleSpine Imaging and Spine Image-Guided Interventions
Open Access

Deep Learning–Based Automatic Segmentation of Lumbosacral Nerves on CT for Spinal Intervention: A Translational Study

G. Fan, H. Liu, Z. Wu, Y. Li, C. Feng, D. Wang, J. Luo, W.M. Wells and S. He
American Journal of Neuroradiology May 2019, DOI: https://doi.org/10.3174/ajnr.A6070
G. Fan
aFrom the Orthopedic Department, Shanghai Tenth People's Hospital (G.F., C.F., D.W., S.H.), Tongji University School of Medicine, Shanghai, China
bDepartment of Spine Surgery (G.F.), Third Affiliated Hospital of Sun Yatsen University, Guangzhou, China
cSurgical Planning Lab (G.F., J.L., W.M.W.), Radiology Department, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts
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H. Liu
dSpinal Pain Research Institute of Tongji University (H.L., C.F., D.W., S.H.), Shanghai, China
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Z. Wu
eSchool of Data and Computer Science (Z.W.), Sun Yat-sen University, Guangzhou, China
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Y. Li
fShanghai Jiao Tong University School of Medicine (Y.L.), Shanghai, China
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C. Feng
aFrom the Orthopedic Department, Shanghai Tenth People's Hospital (G.F., C.F., D.W., S.H.), Tongji University School of Medicine, Shanghai, China
dSpinal Pain Research Institute of Tongji University (H.L., C.F., D.W., S.H.), Shanghai, China
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D. Wang
aFrom the Orthopedic Department, Shanghai Tenth People's Hospital (G.F., C.F., D.W., S.H.), Tongji University School of Medicine, Shanghai, China
dSpinal Pain Research Institute of Tongji University (H.L., C.F., D.W., S.H.), Shanghai, China
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J. Luo
cSurgical Planning Lab (G.F., J.L., W.M.W.), Radiology Department, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts
gGraduate School of Frontier Sciences (J.L.), University of Tokyo, Tokyo, Japan.
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W.M. Wells III
cSurgical Planning Lab (G.F., J.L., W.M.W.), Radiology Department, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts
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S. He
aFrom the Orthopedic Department, Shanghai Tenth People's Hospital (G.F., C.F., D.W., S.H.), Tongji University School of Medicine, Shanghai, China
dSpinal Pain Research Institute of Tongji University (H.L., C.F., D.W., S.H.), Shanghai, China
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Abstract

BACKGROUND AND PURPOSE: 3D reconstruction of a targeted area (“safe” triangle and Kambin triangle) may benefit the viability assessment of transforaminal epidural steroid injection, especially at the L5/S1 level. However, manual segmentation of lumbosacral nerves for 3D reconstruction is time-consuming. The aim of this study was to investigate the feasibility of deep learning–based segmentation of lumbosacral nerves on CT and the reconstruction of the safe triangle and Kambin triangle.

MATERIALS AND METHODS: A total of 50 cases of spinal CT were manually labeled for lumbosacral nerves and bones using Slicer 4.8. The ratio of training/validation/testing was 32:8:10. A 3D U-Net was adopted to build the model SPINECT for automatic segmentations of lumbosacral structures. The Dice score, pixel accuracy, and Intersection over Union were computed to assess the segmentation performance of SPINECT. The areas of Kambin and safe triangles were measured to validate the 3D reconstruction.

RESULTS: The results revealed successful segmentation of lumbosacral bone and nerve on CT. The average pixel accuracy for bone was 0.940, and for nerve, 0.918. The average Intersection over Union for bone was 0.897 and for nerve, 0.827. The Dice score for bone was 0.945, and for nerve, it was 0.905. There were no significant differences in the quantified Kambin triangle or safe triangle between manually segmented images and automatically segmented images (P > .05).

CONCLUSIONS: Deep learning–based automatic segmentation of lumbosacral structures (nerves and bone) on routine CT is feasible, and SPINECT-based 3D reconstruction of safe and Kambin triangles is also validated.

ABBREVIATIONS:

ESI
epidural steroid injection
IoU
Intersection over Union
tESI
transforaminal epidural steroid injection

Footnotes

  • G. Fan and H. Liu contributed equally to the study.

  • Disclosures: William M. Wells—RELATED: Grant: National Institutes of Health, Comments: P41*; UNRELATED: Employment: Brigham and Women's Hospital, Massachusetts Institute of Technology; Grants/Grants Pending: National Institutes of Health, Comments: P41, R01s.* Shisheng He—RELATED: Grant: Shanghai Shenkang Hospital Development Center.* *Money paid to the institution.

  • This work is supported by the China Scholarship Council (201706260169), Shanghai Hospital Development Center (16CR3017A), and National Institutes of Health grant P41EB015898 (W.M.W.).

  • © 2019 by American Journal of Neuroradiology

Indicates open access to non-subscribers at www.ajnr.org

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Cite this article
G. Fan, H. Liu, Z. Wu, Y. Li, C. Feng, D. Wang, J. Luo, W.M. Wells, S. He
Deep Learning–Based Automatic Segmentation of Lumbosacral Nerves on CT for Spinal Intervention: A Translational Study
American Journal of Neuroradiology May 2019, DOI: 10.3174/ajnr.A6070

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Deep Learning–Based Automatic Segmentation of Lumbosacral Nerves on CT for Spinal Intervention: A Translational Study
G. Fan, H. Liu, Z. Wu, Y. Li, C. Feng, D. Wang, J. Luo, W.M. Wells, S. He
American Journal of Neuroradiology May 2019, DOI: 10.3174/ajnr.A6070
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